HIBAG – HLA Genotype Imputation with Attribute Bagging

Genotyping Platforms

If you are interested in the HIBAG prediction models specific to a genotyping platform, please send an email to Dr. Xiuwen Zheng or check the following platforms:

Illumina Human610-Quad v1.0:

Two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models

Illumina Human660W-Quad v1.0:

One-field (2-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models
Two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models

Illumina HumanOmniExpress (based on HumanOmniExpress-12v1-1_B):

Two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models

Illumina HumanOmni1-Quad (based on Omni1_Quad_v1_0_H):

Two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models

Illumina HumanOmni2.5 (based on HumanOmni2.5-8v1_C):

Two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models

Illumina HumanOmni5 (based on HumanOmni5-4v1_C):

Two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry;

Illumina Infinium HumanOmniExpressExome (based on HumanOmniExpressExome-8v1.1):

Two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry;

Illumina Infinium Omni2.5Exome-8 BeadChip Kit:

Two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models

Illumina Infinium HumanOmni5Exome (based on HumanOmni5Exome-4v1.0):

Two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry;

Illumina HumanExome:

hg18 assembly (HumanExome-12v1.0), Two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry;
hg19 assembly (HumanExome-12v1.2_a), One-field (2-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models
hg19 assembly (HumanExome-12v1.2_a), Two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models

Illumina HumanCoreExome (based on HumanCoreExome-12v1.0):

One-field (2-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry;
Two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models

Illumina ImmunoChip (hg18 models are based on gene annotation file at http://support.illumina.com/downloads/immunochip_product_support_files.ilmn):

hg18, one-field (2-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry;
hg18, two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry;
hg19, one-field (2-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models
hg19, two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models

Illumina Human Omni Zhonghua-8 Beadchip:

Two-field (4-digit) resolution: Ethnic-specific models of Asian ancestry; Multi-ethnic models

Illumina Infinium OncoArray-500K BeadChip:

Two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models

Illumina Infinium OmniExpress-24 v1.2:

Two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models

Illumina MHC Exon-centric Golden Gate panel:

One-field (2-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models
Two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models

Illumina PsychArray-B:

Two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models

Illumina Sentrix HumanHap300:

Two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models

Illumina Infinium Multi-Ethnic Global BeadChip:

Two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models

Illumina Infinium Global Screening Array v2.0:

Two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models

Affymetrix Genome-Wide Human SNP Array 5.0:

One-field (2-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models
Two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models

Affymetrix Genome-Wide Human SNP Array 6.0:

One-field (2-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models
Two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models

Affymetrix Axiom® Exome 319 Array Plate:

One-field (2-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models
Two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models

Affymetrix Axiom® Genome-Wide ASI 1 Array Plate:

One-field (2-digit) resolution: Ethnic-specific model of Asian ancestry; Multi-ethnic models
Two-field (4-digit) resolution: Ethnic-specific model of Asian ancestry; Multi-ethnic models

Affymetrix Axiom® Genome-Wide CHB 1 Array Plate:

One-field (2-digit) resolution: Ethnic-specific model of Asian ancestry; Multi-ethnic models
Two-field (4-digit) resolution: Ethnic-specific model of Asian ancestry; Multi-ethnic models

Affymetrix Axiom® Human Origins 1 Array:

One-field (2-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models
Two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models

Affymetrix Axiom® UK Biobank Array:

One-field (2-digit) resolution: Ethnic-specific model of European ancestry; Multi-ethnic models
Two-field (4-digit) resolution: Ethnic-specific model of European ancestry; Multi-ethnic models

Affymetrix Axiom® World Arrays Genome-Wide EUR 1 Array Plate:

One-field (2-digit) resolution: Ethnic-specific model of European ancestry; Multi-ethnic models
Two-field (4-digit) resolution: Ethnic-specific model of European ancestry; Multi-ethnic models

Affymetrix Axiom® World Arrays Genome-Wide EAS 1 Array Plate:

One-field (2-digit) resolution: Ethnic-specific model of Asian ancestry; Multi-ethnic models
Two-field (4-digit) resolution: Ethnic-specific model of Asian ancestry; Multi-ethnic models

Axiom™ Precision Medicine Research Array (PMRA):

Two-field (4-digit) resolution: Ethnic-specific models of European, Asian, Hispanic or African ancestry; Multi-ethnic models